{ "_id": "6a16afd5acfb0bcc41d84bb5", "Package": "lpc", "Type": "Package", "Title": "Lassoed Principal Components for Testing Significance of\nFeatures", "Version": "1.0.2.1", "Date": "2013-12-15", "Author": "Daniela M Witten and Robert Tibshirani", "Maintainer": "Daniela M Witten ", "Description": "Implements the LPC method of Witten&Tibshirani(Annals of\nApplied Statistics 2008) for identification of significant\ngenes in a microarray experiment.", "License": "GPL (>= 2)", "Packaged": { "Date": "2026-05-27 08:46:03 UTC", "User": "root" }, "NeedsCompilation": "no", "Repository": "https://danielawitten.r-universe.dev", "Date/Publication": "2019-01-04 16:06:05 UTC", "RemoteUrl": "https://github.com/cran/lpc", "RemoteRef": "HEAD", "RemoteSha": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "MD5sum": "791d7bb47f48663797ddac66d7106fea", "_user": "danielawitten", "_type": "src", "_file": "lpc_1.0.2.1.tar.gz", "_fileid": "9a820c755b776e4789cb9dcdd14ff578fe06087d87f6f039cd662b7d14bc8001", "_filesize": 142841, "_sha256": "9a820c755b776e4789cb9dcdd14ff578fe06087d87f6f039cd662b7d14bc8001", "_created": "2026-05-27T08:46:03.000Z", "_published": "2026-05-27T08:48:21.844Z", "_distro": "noble", "_jobs": [ { "job": 78040701336, "time": 104, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7235979499" }, { "job": 78040701259, "time": 104, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7235979627" }, { "job": 78040701361, "time": 72, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7235967857" }, { "job": 78040701411, "time": 99, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7235977989" }, { "job": 78040348642, "time": 118, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7235942745" }, { "job": 78040701249, "time": 84, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7235972471" }, { "job": 78040701437, "time": 85, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7235972784" }, { "job": 78040701247, "time": 53, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7235962050" }, { "job": 78040701244, "time": 71, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7235967363" } ], "_buildurl": "https://github.com/r-universe/danielawitten/actions/runs/26500760477", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/lpc", "_commit": { "id": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "author": "Daniela M Witten ", "committer": "cran-robot ", "message": "version 1.0.2.1\n", "time": 1546617965 }, "_maintainer": { "name": "Daniela M Witten", "email": "dwitten@uw.edu", "login": "danielawitten", "description": "", "uuid": 12654191 }, "_registered": true, "_dependencies": [], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "danielawitten", "count": 2, "uuid": 12654191 } ], "_userbio": { "uuid": 12654191, "type": "user", "name": "danielawitten" }, "_downloads": { "count": 188, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/lpc" }, "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/lpc.html", "manual.pdf" ], "_realowner": "danielawitten", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2008-06-11" }, { "version": "1.0.1", "date": "2009-05-24" }, { "version": "1.0.2", "date": "2013-12-15" }, { "version": "1.0.2.1", "date": "2019-01-04" } ], "_exports": [ "EstimateLPCFDR", "EstimateTFDR", "LPC", "PlotFDRs", "PredictiveAdvantage", "print.lpcfdrobj", "print.lpcobj", "print.tfdrobj", "PrintGeneList" ], "_help": [ { "page": "lpc-package", "title": "This package implements the Lassoed Principal Components (LPC) method. It is used to compute LPC scores for each gene in a microrray experiment with a survival, quantitative, or two-class outcome.", "topics": [ "lpc-package", "lpc" ] }, { "page": "EstimateLPCFDR", "title": "Estimate LPC False Discovery Rates.", "topics": [ "EstimateLPCFDR" ] }, { "page": "EstimateTFDR", "title": "Estimate T False Discovery Rates.", "topics": [ "EstimateTFDR" ] }, { "page": "LPC", "title": "Compute LPC score for each gene", "topics": [ "LPC" ] }, { "page": "PlotFDRs", "title": "Plot FDRs for both T and LPC", "topics": [ "PlotFDRs" ] }, { "page": "PredictiveAdvantage", "title": "Plot predictive advantage of LPC vs. T", "topics": [ "PredictiveAdvantage" ] }, { "page": "PrintGeneList", "title": "Print the list of genes with highest LPC scores", "topics": [ "PrintGeneList" ] } ], "_rundeps": [], "_score": 1, "_indexed": true, "_nocasepkg": "lpc", "_universes": [ "danielawitten" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.2.1", "date": "2026-05-27T08:47:52.000Z", "distro": "noble", "commit": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "fileid": "6c737842563ec968bcc3a7451dd1e3d206857323a98e037188458861a883a9d9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/danielawitten/actions/runs/26500760477" }, { "r": "4.6.0", "os": "linux", "version": "1.0.2.1", "date": "2026-05-27T08:47:50.000Z", "distro": "noble", "commit": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "fileid": "651d51cbfe1ca122a36b55453dd5f813bb2c8072efe3e58b5977a799927e58b6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/danielawitten/actions/runs/26500760477" }, { "r": "4.5.3", "os": "mac", "version": "1.0.2.1", "date": "2026-05-27T08:47:23.000Z", "commit": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "fileid": "b5402cd36e474d0c2429a9aa100332504ad1998dca7b7d617d77adbbe251454d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/danielawitten/actions/runs/26500760477" }, { "r": "4.6.0", "os": "mac", "version": "1.0.2.1", "date": "2026-05-27T08:47:47.000Z", "commit": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "fileid": "f5d6b7295b9e7528184f03f95ea11dcb57b4a30232bd6675451fe7e088d01915", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/danielawitten/actions/runs/26500760477" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.2.1", "date": "2026-05-27T08:47:42.000Z", "commit": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "fileid": "68fd38916ae3673c2278585138bad8815d4dc04ae43ebd253b50e204cf2e8f97", "status": "success", "buildurl": "https://github.com/r-universe/danielawitten/actions/runs/26500760477" }, { "r": "4.7.0", "os": "win", "version": "1.0.2.1", "date": "2026-05-27T08:47:27.000Z", "commit": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "fileid": "1d25cd9f8ddbb6eaa9a0c08fc52c9b657e1da200638623712054d4a32eaf2593", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/danielawitten/actions/runs/26500760477" }, { "r": "4.5.3", "os": "win", "version": "1.0.2.1", "date": "2026-05-27T08:46:59.000Z", "commit": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "fileid": "302343cd58ea1c615831dc30aabb0fcc1e98d0910caf637f14e2f959d92256bc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/danielawitten/actions/runs/26500760477" }, { "r": "4.6.0", "os": "win", "version": "1.0.2.1", "date": "2026-05-27T08:47:13.000Z", "commit": "3bdb9d31bf0f3ac630b3e88238ee08ab67d4e891", "fileid": "711378bc2ff6905b9de2cdf9a757aa9d2979b850e2e698c5b6a93857bd5f3134", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/danielawitten/actions/runs/26500760477" } ] }